2026-05-06T01:55:00Zhttps://www.radar-service.eu/oai/OAIHandler10.22000/5462023-11-15T14:42:34Z
10.22000/546
Wittenburg, Dörte
Dörte
Wittenburg
0000-0002-3639-2574
Research Institute for Farm Animal Biology (FBN)
Qanbari, Saber
Saber
Qanbari
0000-0001-6866-2332
Research Institute for Farm Animal Biology (FBN)
Supplemental data to publication "Evidence of Rare Misassemblies in the Bovine Reference Genome Revealed by Population Genetic Metrics" (Animal Genetics)
Research Institute for Farm Animal Biology (FBN), Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany
2022
2022
Agriculture
Biology
Life Science
Genetics
misplaced SNP, recombination rate, linkage disequilibrium
Open Access
Creative Commons Attribution 4.0 International
Research Institute for Farm Animal Biology (FBN), Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany
Schnabel, Robert D.
0000-0001-5018-7641
University of Missouri, Division of Animal Sciences
Population genetic metrics help to evaluate the genomic map coordinates of the SNP markers sited on SNP genotyping arrays. A three-step approach combining the recombination and linkage disequilibrium (LD) analyses was applied to the Illumina Bovine SNP50 genotyping array in a large pedigree of Holstein cattle consisting of 367,056 animals distributed in 1,053 half-sib families to investigate if the markers fit into the assigned physical map coordinates. A panel of 65 markers was suggested as misplacement candidates. Results of both recombination and LD analyses for each candidate marker are presented. List of marker names and coordinates within 30 refined problematic regions are supplemented. This data is associated with a publication in Animal Genetics (Qanbari et al. 2022).
en
Bundesministerium für Bildung und Forschung (BMBF)
https://ror.org/04pz7b180
031L0166
CLARITY - The construction of a combined physical-genetic map for a breed of dairy cattle in Germany
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