2026-04-17T11:40:59Zhttps://www.radar-service.eu/oai/OAIHandler10.48606/rtda48r76y1e71cc2026-02-10T03:00:40Z
10.48606/rtda48r76y1e71cc
Berg, Andrej
Andrej
Berg
0000-0002-5232-1995
Max Planck Institute for Polymer Research
Molecular Dynamics Simulations of Linear Ubiquitin Dimers
University of Konstanz
2018
2025
Chemistry
Molecular Dynamics
Gromacs
Ubiquitin
GROMOS
MD Simulations
Open Access
Creative Commons Zero v1.0 Universal
Andrej, Berg
0000-0002-5232-1995
Kukharenko, Oleksandra
0000-0002-3285-1403
Max Planck Institute for Polymer Research
Peter, Christine
0000-0002-1471-5440
University of Konstanz
This dataset contains trajectory data of linear linked ubiquitin dimers (diUb). Each simulation (12x) is 50 ns long and was started from an open (ubiquitin moieties are separated) conformation to give 60 000 samples every 10 ps. Simulations were performed using the GROMACS simulation package v.5 and the GROMOS 54a7 force field.
10.1371/journal.pcbi.1006589
10.1021/acs.jcim.5c00887
Ministerium für Wissenschaft, Forschung und Kunst Baden-Württemberg
https://doi.org/10.13039/501100003542
Deutsche Forschungsgemeinschaft
https://doi.org/10.13039/501100001659
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